To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

In most cases, you don't need to download the package archive at all.

BiocStyle

 

   

Standard styles for vignettes and other Bioconductor documents

Bioconductor version: Release (3.3)

Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Author: Andrzej OleĊ›, Martin Morgan, Wolfgang Huber

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocStyle")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocStyle")

 

PDF R Script Bioconductor LaTeX Style
PDF R Script Bioconductor LaTeX Style 2.0
HTML R Script Bioconductor style for HTML documents
PDF   Reference Manual

Details

biocViews Software
Version 2.0.2
In Bioconductor since BioC 2.13 (R-3.0) (3 years)
License Artistic-2.0
Depends
Imports utils
LinkingTo
Suggests knitr (>= 1.12), rmarkdown, BiocGenerics, RUnit
SystemRequirements
Enhances
URL https://github.com/Bioconductor/BiocStyle
BugReports https://github.com/Bioconductor/BiocStyle/issues
Depends On Me curatedBreastData
Imports Me BubbleTree, Rqc
Suggests Me ABAData, ABAEnrichment, affycoretools, AllelicImbalance, AnnotationDbi, AnnotationForge, AnnotationHub, AnnotationHubData, arrayQualityMetrics, ASGSCA, bacon, bamsignals, BayesPeak, baySeq, beadarray, BeadDataPackR, BgeeDB, bigmemoryExtras, bioassayR, BiocParallel, biomformat, biosigner, BitSeq, blima, blimaTestingData, BrowserViz, BrowserVizDemo, bsseq, CAFE, CAnD, Cardinal, CardinalWorkflows, ccrepe, cellity, cellTree, CexoR, ChemmineDrugs, ChemmineOB, ChemmineR, Chicago, ChIPComp, ChIPpeakAnno, ChIPQC, ChIPseeker, ClassifyR, cleanUpdTSeq, cleaver, clipper, clusterProfiler, ClusterSignificance, CNEr, CNPBayes, coMET, compcodeR, CONFESS, consensusSeekeR, contiBAIT, conumee, CopyhelpeR, CopywriteR, CoRegNet, COSMIC.67, cosmiq, CountClust, cpvSNP, CRISPRseek, CrispRVariants, curatedBladderData, curatedCRCData, curatedOvarianData, dada2, dagLogo, DAPAR, DChIPRep, DEFormats, DEGreport, derfinder, derfinderHelper, derfinderPlot, DESeq2, DEXSeq, DiffBind, DmelSGI, DNABarcodes, doppelgangR, DOSE, DRIMSeq, DSS, dupRadar, easyRNASeq, EBImage, EDASeq, EGSEA, eiR, ELMER, ELMER.data, EmpiricalBrownsMethod, EnrichmentBrowser, ensembldb, erma, EWCE, ExperimentHub, ExperimentHubData, FamAgg, fCI, FindMyFriends, flowcatchR, flowMap, FlowSOM, fmcsR, FourCSeq, furrowSeg, genefilter, GeneOverlap, GenoGAM, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, GenomicTuples, genoset, GenVisR, GeuvadisTranscriptExpr, ggbio, Glimma, GMRP, GOexpress, GoogleGenomics, GOSemSim, gQTLBase, gQTLstats, graphite, GreyListChIP, groHMM, GSAR, GSE62944, GUIDEseq, Gviz, Harman, HarmanData, HD2013SGI, HDF5Array, Hiiragi2013, HiTC, hpar, HTSFilter, iGC, IHW, IHW, IHWpaper, illuminaio, imageHTS, Imetagene, immunoClust, InPAS, INSPEcT, InteractionSet, IONiseR, isomiRs, IVAS, JctSeqData, JunctionSeq, Linnorm, LowMACA, lpsymphony, M3D, mAPKL, MatrixRider, MBASED, MBttest, mdgsa, MEAL, MEDIPS, messina, metagene, metaX, MethPed, MethylAid, MethylAidData, MethylMix, minfi, minionSummaryData, miRcomp, missMethyl, MMDiff2, mogsa, motifbreakR, motifStack, mQTL.NMR, MSnbase, MSnID, msqc1, mygene, myvariant, mzR, NanoStringDiff, NanoStringQCPro, NarrowPeaks, netbiov, nethet, nondetects, npGSEA, nucleoSim, oligo, omicade4, OmicsMarkeR, OncoScore, OncoSimulR, OperaMate, Oscope, PAA, PANTHER.db, PanVizGenerator, parathyroidSE, PasillaTranscriptExpr, Path2PPI, paxtoolsr, Pbase, pcaExplorer, PCAN, PCHiCdata, PGA, PGPC, phyloseq, plethy, Polyfit, pqsfinder, profileScoreDist, pRoloc, pRolocGUI, PROPER, Prostar, ProteomicsAnnotationHubData, proteoQC, PSEA, PureCN, PWMEnrich, qcmetrics, QDNAseq, qpgraph, quantro, QuasR, R3CPET, rain, Rcade, rcellminer, rcellminerData, rCGH, RCyjs, ReactomePA, recoup, RefNet, regioneR, regionReport, ReQON, RforProteomics, rfPred, RGraph2js, RGSEA, rhdf5, Rhtslib, RiboProfiling, riboSeqR, RNAprobR, rnaseqcomp, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, rols, ropls, rpx, Rsamtools, RTCGAToolbox, RUVcorr, RUVSeq, sangerseqR, sapFinder, sbgr, scater, SCLCBam, scran, segmentSeq, seqPattern, seqplots, SeqVarTools, sevenbridges, SGSeq, shinyMethyl, ShortRead, SigCheck, SigFuge, similaRpeak, simulatorZ, sincell, Single.mTEC.Transcriptomes, SNPhood, SNPhoodData, soGGi, specL, SpidermiR, SSPA, STAN, STATegRa, SummarizedExperiment, sva, synapter, systemPipeR, systemPipeRdata, TCGAbiolinks, TFBSTools, tigre, TimerQuant, TPP, tracktables, trackViewer, transcriptR, traseR, TRONCO, TurboNorm, variancePartition, VariantAnnotation, VariantFiltering, wavClusteR, XBSeq, yriMulti, zebrafishRNASeq
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BiocStyle_2.0.2.tar.gz
Windows Binary BiocStyle_2.0.2.zip
Mac OS X 10.9 (Mavericks) BiocStyle_2.0.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BiocStyle/tree/release-3.3
Package Short Url http://bioconductor.org/packages/BiocStyle/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: