To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

In most cases, you don't need to download the package archive at all.

BiocStyle

 

Standard styles for vignettes and other Bioconductor documents

Bioconductor version: Release (3.1)

Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

Author: Martin Morgan, Andrzej Oles, Wolfgang Huber

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocStyle")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiocStyle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocStyle")

 

PDF R Script Bioconductor LaTeX Style
HTML R Script Bioconductor style for HTML documents
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License Artistic-2.0
Depends
Imports
LinkingTo
Suggests knitr (>= 1.7), rmarkdown, BiocGenerics, RUnit
SystemRequirements
Enhances
URL
Depends On Me curatedBreastData
Imports Me Rqc
Suggests Me affycoretools, AnnotationDbi, AnnotationForge, AnnotationHub, arrayQualityMetrics, ASGSCA, bamsignals, BayesPeak, baySeq, beadarray, BeadDataPackR, bioassayR, BiocParallel, BitSeq, blima, blimaTestingData, BrowserViz, BrowserVizDemo, BubbleTree, CAFE, CAnD, Cardinal, CardinalWorkflows, ccrepe, CexoR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIPpeakAnno, ChIPQC, ChIPseeker, ClassifyR, cleaver, clipper, clusterProfiler, coMET, compcodeR, conumee, CopyhelpeR, CopywriteR, CoRegNet, COSMIC.67, cosmiq, cpvSNP, CRISPRseek, curatedBladderData, curatedCRCData, curatedOvarianData, dagLogo, DEGreport, DESeq2, DEXSeq, DiffBind, DmelSGI, DOSE, DSS, easyRNASeq, EBImage, EDASeq, eiR, EnrichmentBrowser, ensembldb, flowcatchR, flowMap, FlowSOM, fmcsR, FourCSeq, genefilter, GeneOverlap, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, GenomicTuples, ggbio, ggtree, GOexpress, GoogleGenomics, GOSemSim, gQTLBase, gQTLstats, graphite, GreyListChIP, groHMM, GSAR, Gviz, HD2013SGI, HIBAG, Hiiragi2013, HiTC, hpar, HTSFilter, illuminaio, imageHTS, immunoClust, InPAS, IVAS, M3D, mAPKL, MatrixRider, MBASED, mdgsa, MEDIPS, messina, MethylAid, MethylAidData, MethylMix, missMethyl, mogsa, motifStack, mQTL.NMR, MSnbase, MSnID, mygene, mzR, NanoStringQCPro, NarrowPeaks, netbiov, nethet, nondetects, npGSEA, oligo, omicade4, OmicsMarkeR, OncoSimulR, PAA, parathyroidSE, paxtoolsr, Pbase, plethy, Polyfit, pRoloc, PROPER, proteoQC, PSEA, PWMEnrich, qcmetrics, qpgraph, quantro, QuasR, R3CPET, rain, Rcade, rcellminer, rcellminerData, RCyjs, ReactomePA, RefNet, regioneR, ReQON, RforProteomics, rfPred, RGSEA, rhdf5, Rhtslib, riboSeqR, RNAprobR, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, rols, rpx, Rsamtools, RUVcorr, RUVSeq, sangerseqR, sapFinder, SCLCBam, segmentSeq, SeqArray, seqPattern, seqplots, SeqVarTools, SGSeq, shinyMethyl, ShortRead, SigCheck, SigFuge, simulatorZ, sincell, soGGi, SomaticCancerAlterations, specL, SSPA, STAN, STATegRa, sva, synapter, systemPipeR, TFBSTools, tigre, TPP, tracktables, trackViewer, TurboNorm, VariantAnnotation, VariantFiltering, zebrafishRNASeq
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BiocStyle_1.6.0.tar.gz
Windows Binary BiocStyle_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) BiocStyle_1.6.0.tgz
Mac OS X 10.9 (Mavericks) BiocStyle_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BiocStyle/tree/release-3.1
Package Short Url http://bioconductor.org/packages/BiocStyle/
Package Downloads Report Download Stats

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