sechm

DOI: 10.18129/B9.bioc.sechm    

sechm: Complex Heatmaps from a SummarizedExperiment

Bioconductor version: Release (3.14)

sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("sechm")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sechm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sechm")

 

HTML R Script sechm
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License GPL-3
Depends R (>= 4.1)
Imports S4Vectors, SummarizedExperiment, seriation, ComplexHeatmap, circlize, methods, randomcoloR, stats, grid, grDevices
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/plger/sechm
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sechm_1.2.0.tar.gz
Windows Binary sechm_1.2.0.zip
macOS 10.13 (High Sierra) sechm_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sechm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sechm
Package Short Url https://bioconductor.org/packages/sechm/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: