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Ramos, M, et al. (2017) Software for the Integration of Multiomics Experiments in Bioconductor Cancer Research 77:e39-e42. doi:10.1158/0008-5472.CAN-17-0344
Pasolli, E, et al. (2017) Accessible, curated metagenomic data through ExperimentHub Nature Methods 14, 1023–1024. doi:10.1038/nmeth.4468
Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration).
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, et al. (2013) Software for Computing and Annotating Genomic Ranges. PLoS Comput Biol 9(8): e1003118. doi: 10.1371/journal.pcbi.1003118
Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x.

Recent

20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2018-10-17T21:20:07-04:00.

Hager S, Korbula K, Bielec B, Grusch M, Pirker C, Schosserer M, Liendl L, Lang M, Grillari J, Nowikovsky K, Pape VF, Mohr T, Szakács G, Keppler BK, Berger W, Kowol CR, Heffeter P. The thiosemicarbazone Me2NNMe2 induces paraptosis by disrupting the ER thiol redox homeostasis based on protein disulfide isomerase inhibition Cell Death Dis, 9(11), pp. 1052. doi:10.1038/s41419-018-1102-z (15 October 2018)
Chan CS, Laddha SV, Lewis PW, Koletsky MS, Robzyk K, Da Silva E, Torres PJ, Untch BR, Li J, Bose P, Chan TA, Klimstra DS, Allis CD, Tang LH. ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct alpha-cell signature subgroup Nat Commun, 9, pp. 4158. doi:10.1038/s41467-018-06498-2 (12 October 2018)
Xu Y, Huang B. Comparative transcriptomic analysis reveals common molecular factors responsive to heat and drought stress in Agrostis stolonifera Sci Rep, 8, pp. 15181. doi:10.1038/s41598-018-33597-3 (12 October 2018)
Harshan S, Dey P, Ragunathan S. Effects of rheumatoid arthritis associated transcriptional changes on osteoclast differentiation network in the synovium PeerJ, 6, pp. e5743. doi:10.7717/peerj.5743 (11 October 2018)
Kennerdell JR, Liu N, Bonini NM. MiR-34 inhibits polycomb repressive complex 2 to modulate chaperone expression and promote healthy brain aging Nat Commun, 9, pp. 4188. doi:10.1038/s41467-018-06592-5 (10 October 2018)
Rinne P, Lyytikäinen LP, Raitoharju E, Kadiri JJ, Kholova I, Kähönen M, Lehtimäki T, Oksala N. Pro-opiomelanocortin and its Processing Enzymes Associate with Plaque Stability in Human Atherosclerosis – Tampere Vascular Study Sci Rep, 8, pp. 15078. doi:10.1038/s41598-018-33523-7 (10 October 2018)
Ma WJ, Veltsos P, Sermier R, Parker DJ, Perrin N. Evolutionary and developmental dynamics of sex-biased gene expression in common frogs with proto-Y chromosomes Genome Biol, 19, pp. 156. doi:10.1186/s13059-018-1548-4 (5 October 2018)
Yang M, Xu Z, Zhao W, Liu Q, Li Q, Lu L, Liu R, Zhang X, Cui F. Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus BMC Plant Biol, 18, pp. 219. doi:10.1186/s12870-018-1438-7 (4 October 2018)
Kluin RJ, Kemper K, Kuilman T, de Ruiter JR, Iyer V, Forment JV, Cornelissen-Steijger P, de Rink I, ter Brugge P, Song JY, Klarenbeek S, McDermott U, Jonkers J, Velds A, Adams DJ, Peeper DS, Krijgsman O. XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data BMC Bioinformatics, 19, pp. 366. doi:10.1186/s12859-018-2353-5 (4 October 2018)
Agarwal V, Subtelny AO, Thiru P, Ulitsky I, Bartel DP. Predicting microRNA targeting efficacy in Drosophila Genome Biol, 19, pp. 152. doi:10.1186/s13059-018-1504-3 (4 October 2018)
Ni G, Canizales S, Broman E, Simone D, Palwai VR, Lundin D, Lopez-Fernandez M, Sleutels T, Dopson M. Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells Front Microbiol, 9, pp. 2308. doi:10.3389/fmicb.2018.02308 (28 September 2018)
Said R, Garcia-Mayea Y, Trabelsi N, Setti Boubaker N, Mir C, Blel A, Ati N, Paciucci R, Hernández-Losa J, Rammeh S, Derouiche A, Chebil M, LLeonart ME, Ouerhani S. Expression patterns and bioinformatic analysis of miR-1260a and miR-1274a in Prostate Cancer Tunisian patients. Mol Biol Rep. doi:10.1007/s11033-018-4399-x (24 September 2018)
Sun S, Wang Y, Wu Y, Gao Y, Li Q, Abdulrahman AA, Liu XF, Ji GQ, Gao J, Li L, Wan FP, Li YQ, Gao DS. Identification of COL1A1 as an invasion‑related gene in malignant astrocytoma. Int J Oncol. doi:10.3892/ijo.2018.4568 (21 September 2018)
Page CM, Vos L, Rounge TB, Harbo HF, Andreassen BK. Assessing genome-wide significance for the detection of differentially methylated regions. Stat Appl Genet Mol Biol. doi:10.1515/sagmb-2017-0050 (19 September 2018)
Rabaglino MB, Keller-Wood M, Wood CE. A transcriptomics model of estrogen action in the ovine fetal hypothalamus: evidence for estrogenic effects of ICI 182,780. Physiol Rep, 6(18), pp. e13871. doi:10.14814/phy2.13871 (18 September 2018)
Lone BA, Karna SK, Ahmad F, Shahi N, Pokharel YR. CRISPR/Cas9 System: A Bacterial Tailor for Genomic Engineering Genet Res Int, 2018, pp. 3797214. doi:10.1155/2018/3797214 (18 September 2018)
Borys S, Ludwig-Slomczynska AH, Seweryn M, Hohendorff J, Koblik T, Machlowska J, Kiec-Wilk B, Wolkow P, Malecki MT. Negative pressure wound therapy in the treatment of diabetic foot ulcers may be mediated through differential gene expression. Acta Diabetol. doi:10.1007/s00592-018-1223-y (17 September 2018)
Rojas-Peña ML, Duan M, Arafat D, Rengifo L, Herrera S, Arévalo-Herrera M, Gibson G. Individualized Transcriptional Resolution of Complicated Malaria in a Colombian Study J Pers Med, 8(3), pp. 29. doi:10.3390/jpm8030029 (14 September 2018)
Sales G, Calura E, Romualdi C. metaGraphite - a new layer of pathway annotation to get metabolite networks. Bioinformatics. doi:10.1093/bioinformatics/bty719 (4 September 2018)

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