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Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x.
Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration). PMC4509590
Kannan L, et al. (2015). Public data and open source tools for multi-assay genomic investigation of disease. Brief Bioinform. doi:10.1093/bib/bbv080
Love M, Huber W, and Anders S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15:550; doi:10.1186/s13059-014-0550-8
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20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2016-10-24T02:00:24-04:00.

Sayols S, Scherzinger D, Klein H. dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data. BMC Bioinformatics, 17(1), pp. 428. doi:10.1186/s12859-016-1276-2 (21 October 2016)
Grassi E, Mariella E, Lembo A, Molineris I, Provero P. Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. BMC Bioinformatics, 17(1), pp. 423. doi:10.1186/s12859-016-1254-8 (18 October 2016)
Eikrem OS, Strauss P, Beisland C, Scherer A, Landolt L, Flatberg A, Leh S, Beisvag V, Skogstrand T, Hjelle K, Shresta A, Marti HP. Development and confirmation of potential gene classifiers of human clear cell renal cell carcinoma using next-generation RNA sequencing. Scand J Urol, pp. 1-11. doi:10.1080/21681805.2016.1238007 (14 October 2016)
Dukić M, Berner D, Roesti M, Haag CR, Ebert D. A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna BMC Genet, 17, pp. 137. doi:10.1186/s12863-016-0445-7 (13 October 2016)
Picaud S, Leonards K, Lambert JP, Dovey O, Wells C, Fedorov O, Monteiro O, Fujisawa T, Wang CY, Lingard H, Tallant C, Nikbin N, Guetzoyan L, Ingham R, Ley SV, Brennan P, Muller S, Samsonova A, Gingras AC, Schwaller J, Vassiliou G, Knapp S, Filippakopoulos P. Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemia Sci Adv, 2(10), pp. e1600760. doi:10.1126/sciadv.1600760 (12 October 2016)
Paul S, Gayen D, Datta SK, Datta K. Analysis of high iron rice lines reveals new miRNAs that target iron transporters in roots J Exp Bot, 67(19), pp. 5811-5824. doi:10.1093/jxb/erw346 (11 October 2016)
Wang L, Zhu L, Luan R, Wang L, Fu J, Wang X, Sui L. Analyzing gene expression profiles in dilated cardiomyopathy via bioinformatics methods Braz J Med Biol Res, 49(10), pp. e4897. doi:10.1590/1414-431X20164897 (10 October 2016)
Namouchi A, Gómez-Muñoz M, Frye SA, Moen LV, Rognes T, Tønjum T, Balasingham SV. The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress BMC Genomics, 17, pp. 791. doi:10.1186/s12864-016-3132-1 (10 October 2016)
AbdulHameed MD, Ippolito DL, Stallings JD, Wallqvist A. Mining kidney toxicogenomic data by using gene co-expression modules BMC Genomics, 17, pp. 790. doi:10.1186/s12864-016-3143-y (10 October 2016)
Illingworth RS, Hölzenspies JJ, Roske FV, Bickmore WA, Brickman JM. Polycomb enables primitive endoderm lineage priming in embryonic stem cells eLife, 5, pp. e14926. doi:10.7554/eLife.14926 (10 October 2016)
Jiang Z, Dong X, Li ZG, He F, Zhang Z. Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection Sci Rep, 6, pp. 35064. doi:10.1038/srep35064 (10 October 2016)
Chi C, Ajwad R, Kuang Q, Hu P. A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer Cancer Inform, 15(Suppl 2), pp. 43-50. doi:10.4137/CIN.S39368 (9 October 2016)
Pidsley R, Zotenko E, Peters TJ, Lawrence MG, Risbridger GP, Molloy P, Van Djik S, Muhlhausler B, Stirzaker C, Clark SJ. Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling Genome Biol, 17, pp. 208. doi:10.1186/s13059-016-1066-1 (7 October 2016)
Wang X, Liu X. Close ecological relationship among species facilitated horizontal transfer of retrotransposons BMC Evol Biol, 16, pp. 201. doi:10.1186/s12862-016-0767-0 (7 October 2016)
Zhao K, Zhou X, Li W, Zhang X, Yue B. Nutrient reduction induced stringent responses promote bacterial quorum-sensing divergence for population fitness Sci Rep, 6, pp. 34925. doi:10.1038/srep34925 (7 October 2016)
Vastagh C, Rodolosse A, Solymosi N, Liposits Z. Altered Expression of Genes Encoding Neurotransmitter Receptors in GnRH Neurons of Proestrous Mice Front Cell Neurosci, 10, pp. 230. doi:10.3389/fncel.2016.00230 (7 October 2016)
Bohlin J, Håberg SE, Magnus P, Reese SE, Gjessing HK, Magnus MC, Parr CL, Page CM, London SJ, Nystad W. Prediction of gestational age based on genome-wide differentially methylated regions Genome Biol, 17, pp. 207. doi:10.1186/s13059-016-1063-4 (7 October 2016)
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells Sci Rep, 6, pp. 34589. doi:10.1038/srep34589 (7 October 2016)
Losada A, Muñoz-Alonso MJ, García C, Sánchez-Murcia PA, Martínez-Leal JF, Domínguez JM, Lillo MP, Gago F, Galmarini CM. Translation Elongation Factor eEF1A2 is a Novel Anticancer Target for the Marine Natural Product Plitidepsin Sci Rep, 6, pp. 35100. doi:10.1038/srep35100 (7 October 2016)
Kõks S, Keermann M, Reimann E, Prans E, Abram K, Silm H, Kõks G, Kingo K. Psoriasis-Specific RNA Isoforms Identified by RNA-Seq Analysis of 173,446 Transcripts Front Med (Lausanne), 3, pp. 46. doi:10.3389/fmed.2016.00046 (7 October 2016)


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