UniProt.ws

This is the released version of UniProt.ws; for the devel version, see UniProt.ws.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

R Interface to UniProt Web Services

Bioconductor version: Release (3.23)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("UniProt.ws")):

Marc Carlson, Marcel Ramos. UniProt.ws: R Interface to UniProt Web Services. doi:10.18129/B9.bioc.UniProt.ws, R package version 2.52.1, https://bioconductor.org/packages/UniProt.ws.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

UniProt.ws: A package for retrieving data from the UniProt web service	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version	2.52.1
In Bioconductor since	BioC 2.12 (R-3.0) (13.5 years)
License	Artistic-2.0
Depends	R (>= 4.5.0)
Imports	AnnotationDbi, BiocFileCache, BiocBaseUtils, BiocGenerics, httr2, jsonlite, methods, progress, rjsoncons, rlang, utils
System Requirements
URL	https://github.com/Bioconductor/UniProt.ws
Bug Reports	https://github.com/Bioconductor/UniProt.ws/issues

Suggests	BiocStyle, knitr, rmarkdown, tinytest
Linking To
Enhances
Depends On Me
Imports Me	dagLogo, drugTargetInteractions, ginmappeR, immunogenViewer
Suggests Me	autonomics, cleaver, qPLEXanalyzer
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	UniProt.ws_2.52.1.tar.gz
Windows Binary (x86_64)	UniProt.ws_2.52.1.zip
macOS Binary (big-sur-x86_64)	UniProt.ws_2.52.1.tgz
macOS Binary (sonoma-arm64)	UniProt.ws_2.52.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/UniProt.ws
Package Short Url	https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive