To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("minfi")

In most cases, you don't need to download the package archive at all.

minfi

Analyze Illumina's 450k methylation arrays

Bioconductor version: Release (2.14)

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen [cre, aut], Martin Ayree [aut], Rafael A. Irizarry [aut], Andrew E. Jaffe [ctb], Jovana Maksimovic [ctb], E. Andres Houseman [ctb], Jean-Phillipe Fortin [ctb]

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("minfi")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("minfi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minfi")

 

PDF R Script Minfi Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.10.2
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), lattice, GenomicRanges, Biostrings, utils, bumphunter(>= 1.1.9)
Imports IRanges, beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, illuminaio, matrixStats, mclust, genefilter, nlme, reshape
Suggests IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData(>= 0.4.1), quadprog, FlowSorted.Blood.450k(>= 1.0.1), RUnit, digest
System Requirements
URL
Depends On Me ChAMP, CopyNumber450k, CopyNumber450kData, DMRcate, FlowSorted.Blood.450k, FlowSorted.DLPFC.450k, IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, methylumi, minfiData
Imports Me methylumi
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source minfi_1.10.2.tar.gz
Windows Binary minfi_1.10.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) minfi_1.10.2.tgz
Mac OS X 10.9 (Mavericks) minfi_1.10.2.tgz
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