BiocStyle

Standard styles for vignettes and other Bioconductor documents

Bioconductor version: Development (3.0)

Provides standard formatting styles for Bioconductor documents. The vignette illustrates use and functionality.

Author: Martin Morgan, Andrzej Oles, Wolfgang Huber

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BiocStyle")

To cite this package in a publication, start R and enter:

    citation("BiocStyle")

Documentation

PDF R Script Bioconductor LaTeX Style
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.3.1
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends
Imports
Suggests knitr, BiocGenerics, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me affycoretools, AnnotationDbi, AnnotationForge, arrayQualityMetrics, BayesPeak, beadarray, bioassayR, BiocParallel, CAFE, ccrepe, CexoR, ChemmineOB, ChemmineR, ChIPQC, cleaver, clipper, compcodeR, COSMIC.67, CRISPRseek, curatedBladderData, curatedCRCData, dagLogo, DESeq2, DEXSeq, DiffBind, easyRNASeq, EBImage, EDASeq, eiR, fmcsR, GeneOverlap, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, ggbio, graphite, Gviz, HD2013SGI, Hiiragi2013, HiTC, illuminaio, imageHTS, messina, motifStack, NarrowPeaks, nondetects, npGSEA, omicade4, parathyroidSE, plethy, qpgraph, QuasR, Rariant, Rcade, RefNet, ReQON, rfPred, rhdf5, rols, rpx, Rsamtools, sangerseqR, sapFinder, ShortRead, SigFuge, SomaticCancerAlterations, SomaticSignatures, SSPA, trackViewer, TurboNorm, VariantAnnotation, VariantFiltering

Package Downloads

Package Source BiocStyle_1.3.1.tar.gz
Windows Binary BiocStyle_1.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BiocStyle_1.3.1.tgz
Mac OS X 10.9 (Mavericks)
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