To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

In most cases, you don't need to download the package archive at all.

AnnotationForge

Code for Building Annotation Database Packages

Bioconductor version: Release (2.14)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

 

PDF R Script AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF R Script Creating probe packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML R Script Making New Organism Packages
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.6.1
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.1.13), Biobase(>= 1.17.0), AnnotationDbi(>= 1.19.15), org.Hs.eg.db
Imports methods, utils, DBI, RSQLite, BiocGenerics, Biobase
Suggests DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
System Requirements
URL
Depends On Me
Imports Me GGHumanMethCancerPanelv1.db, GOstats, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, illuminaRatv1.db
Suggests Me AnnotationDbi

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationForge_1.6.1.tar.gz
Windows Binary AnnotationForge_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AnnotationForge_1.6.1.tgz
Mac OS X 10.9 (Mavericks) AnnotationForge_1.6.1.tgz
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