To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tracktables")

In most cases, you don't need to download the package archive at all.

tracktables

DOI: 10.18129/B9.bioc.tracktables    

Build IGV tracks and HTML reports

Bioconductor version: Release (3.5)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tracktables")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")

 

PDF R Script Creating IGV HTML reports with tracktables
PDF   Reference Manual
Text   NEWS

Details

biocViews ReportWriting, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 3)
Depends R (>= 3.0.0)
Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
LinkingTo
Suggests knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source tracktables_1.10.0.tar.gz
Windows Binary tracktables_1.10.0.zip
Mac OS X 10.11 (El Capitan) tracktables_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tracktables
Package Short Url http://bioconductor.org/packages/tracktables/
Package Downloads Report Download Stats

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