MSstatsTMT

DOI: 10.18129/B9.bioc.MSstatsTMT    

Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Bioconductor version: Release (3.9)

Tools for protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling.

Author: Ting Huang [aut, cre], Meena Choi [aut], Sicheng Hao [aut], Olga Vitek [aut]

Maintainer: Ting Huang <thuang0703 at gmail.com>

Citation (from within R, enter citation("MSstatsTMT")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsTMT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsTMT")

 

HTML R Script MSstatsTMT User Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.2.1
In Bioconductor since BioC 3.8 (R-3.5) (0.5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports limma, lme4, dplyr, tidyr, nlme, statmod, reshape2, data.table, matrixStats, stats, utils, ggplot2, grDevices, graphics, MSstats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL http://msstats.org/msstatstmt/
BugReports https://groups.google.com/forum/#!forum/msstats
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsTMT_1.2.1.tar.gz
Windows Binary MSstatsTMT_1.2.1.zip
Mac OS X 10.11 (El Capitan) MSstatsTMT_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsTMT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsTMT
Package Short Url http://bioconductor.org/packages/MSstatsTMT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive

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