DOI: 10.18129/B9.bioc.wateRmelon    

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (3.6)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury

Maintainer: Leo <lschal at essex.ac.uk>

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biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.22.1
In Bioconductor since BioC 2.12 (R-3.0) (5 years)
License GPL-3
Depends R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports Biobase
Suggests RPMM
Enhances minfi
Depends On Me bigmelon, skewr
Imports Me ChAMP, ENmix
Suggests Me RnBeads
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Source Package wateRmelon_1.22.1.tar.gz
Windows Binary wateRmelon_1.22.1.zip
Mac OS X 10.11 (El Capitan) wateRmelon_1.22.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/wateRmelon
Package Short Url http://bioconductor.org/packages/wateRmelon/
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