To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

In most cases, you don't need to download the package archive at all.

wateRmelon

 

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (3.1)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

Citation (from within R, enter citation("wateRmelon")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

 

PDF R Script Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.8.0
In Bioconductor since BioC 2.12 (R-3.0) (2.5 years)
License GPL-3
Depends R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19
Imports
LinkingTo
Suggests RPMM
SystemRequirements
Enhances minfi, methylumi, IMA
URL
Depends On Me skewr
Imports Me ChAMP, ENmix
Suggests Me RnBeads
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source wateRmelon_1.8.0.tar.gz
Windows Binary wateRmelon_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) wateRmelon_1.8.0.tgz
Mac OS X 10.9 (Mavericks) wateRmelon_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/wateRmelon/tree/release-3.1
Package Short Url http://bioconductor.org/packages/wateRmelon/
Package Downloads Report Download Stats

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