To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Biobase")

In most cases, you don't need to download the package archive at all.

Biobase

Biobase: Base functions for Bioconductor

Bioconductor version: Release (3.0)

Functions that are needed by many other packages or which replace R functions.

Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Biobase")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Biobase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Biobase")

 

PDF R Script An introduction to Biobase and ExpressionSets
PDF R Script esApply Introduction
PDF R Script Notes for eSet developers
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 2.26.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics(>= 0.3.2), utils
Imports methods
Suggests tools, tkWidgets, ALL, RUnit, golubEsets
System Requirements
URL
Depends On Me a4Base, a4Core, ACME, affy, affycomp, affycompData, affyContam, affycoretools, affyPLM, affyQCReport, AGDEX, AgiMicroRna, ALL, altcdfenvs, annaffy, AnnotationDbi, AnnotationForge, antiProfilesData, ArrayExpress, arrayMvout, ArrayTools, BAGS, bcellViper, beadarray, beadarrayExampleData, beadarraySNP, bgx, BicARE, BiocCaseStudies, bioDist, BioMVCClass, BioNet, birta, bladderbatch, BrainStars, CAMERA, cancerclass, cancerdata, casper, Category, categoryCompare, CCl4, cellHTS, cellHTS2, ceu1kg, ceuhm3, CGHbase, CGHcall, CGHregions, charm, cheung2010, chimera, chroGPS, ClassifyR, clippda, CLL, clusterStab, CMA, cn.farms, cn.mops, codelink, colonCA, convert, copa, CopyNumber450k, CRCL18, davidTiling, ddCt, DESeq, DEXSeq, DFP, DLBCL, dressCheck, dsQTL, DSS, dualKS, dyebias, EBarrays, EDASeq, eisa, encoDnaseI, EnrichmentBrowser, epigenomix, epivizr, ESNSTCC, ExiMiR, fabia, fabiaData, factDesign, fastseg, fibroEset, flowBeads, flowClust, frma, gaga, gaschYHS, GeneAnswers, GeneExpressionSignature, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSelector, geNetClassifier, genoset, GEOquery, GGdata, GOexpress, GOFunction, golubEsets, goProfiles, GOstats, GSEABase, GSEAlm, GSVAdata, GWASTools, hapFabia, harbChIP, HCsnip, HELP, Hiiragi2013, hmyriB36, hopach, HTqPCR, htSeqTools, HTSFilter, humanStemCell, HybridMTest, iBMQ, IdeoViz, idiogram, inSilicoDb, inSilicoMerging, isobar, iterativeBMA, Iyer517, kidpack, leeBamViews, leukemiasEset, LMGene, lumi, lumiBarnes, lungExpression, macat, MAQCsubset, MAQCsubsetAFX, MAQCsubsetILM, maSigPro, massiR, MergeMaid, metabomxtr, metagenomeSeq, methyAnalysis, methylumi, Mfuzz, MiChip, MIMOSA, MineICA, minfi, MiRaGE, miRNATarget, MLInterfaces, MLSeq, MmPalateMiRNA, monocle, msd16s, MSnbase, Mulcom, multtest, mvoutData, Neve2006, NOISeq, nondetects, NormqPCR, nucleR, oligo, oneChannelGUI, OrderedList, OTUbase, OutlierD, PADOG, PAnnBuilder, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, pepStat, PGSEA, phenoTest, PLPE, plrs, prada, PREDA, PREDAsampledata, ProData, PROMISE, prot2D, puma, pumadata, qpcrNorm, R453Plus1Toolbox, RbcBook1, rbsurv, ReadqPCR, reb, RefPlus, rHVDM, Ringo, Risa, Rmagpie, rMAT, RNAinteract, rnaSeqMap, Rnits, Roleswitch, RpsiXML, rqubic, RTCA, RTopper, RUVnormalizeData, safe, SCAN.UPC, SeqGSEA, sigaR, SigCheck, siggenes, simpleaffy, simulatorZ, SpeCond, SPEM, SpikeInSubset, spkTools, splicegear, spliceSites, stepwiseCM, TCGAcrcmiRNA, TCGAcrcmRNA, TDARACNE, tigre, tilingArray, topGO, tspair, tweeDEseqCountData, twilight, UNDO, VegaMC, viper, vsn, waveTiling, webbioc, xcms, XDE, yeastCC
Imports Me ABarray, aCGH, adSplit, affyILM, affyQCReport, AgiMicroRna, annmap, annotate, AnnotationDbi, AnnotationForge, annotationTools, ArrayExpressHTS, arrayQualityMetrics, ArrayTools, asmn, attract, ballgown, betr, bigmemoryExtras, biocViews, BioSeqClass, biosvd, BiSeq, blima, BrainStars, bsseq, CAFE, Category, ccTutorial, ceu1kgv, cgdv17, CGHnormaliter, charm, ChIPQC, ChIPXpress, ChromHeatMap, clipper, ConsensusClusterPlus, crlmm, cummeRbund, cycle, DESeq2, DeSousa2013, DOQTL, easyRNASeq, EBarrays, ecolitk, ExiMiR, farms, ffpe, Fletcher2013a, flowCore, flowFlowJo, flowFP, flowMatch, flowMeans, flowQB, flowStats, flowType, flowUtils, flowViz, flowWorkspace, flowWorkspace, FourCSeq, frma, frmaTools, gCMAP, gCMAPWeb, gcrma, genefilter, GeneMeta, geneRecommender, GeneRegionScan, GeneSelectMMD, GenomicFeatures, GenomicTuples, GEOsubmission, GGBase, ggbio, GGtools, girafe, globaltest, gmapR, GOFunction, GOstats, GSRI, GSVA, Gviz, Harshlight, HEM, HTqPCR, IdMappingAnalysis, imageHTS, IsoGeneGUI, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, lapmix, LiquidAssociation, lumi, LVSmiRNA, maanova, MafDb.ALL.wgs.phase1.release.v3.20101123, MafDb.ALL.wgs.phase1.release.v3.20101123, MafDb.ESP6500SI.V2.SSA137.dbSNP138, MafDb.ESP6500SI.V2.SSA137.dbSNP138, makecdfenv, maSigPro, mBPCR, MCRestimate, MeSHDbi, metaArray, methyAnalysis, methylumi, MiChip, MinimumDistance, MiPP, MMDiff, mmnet, MmPalateMiRNA, MoPS, MSnID, multiscan, mzR, ncdfFlow, npGSEA, nucleR, oligoClasses, openCyto, oposSOM, OrderedList, PADOG, PAnnBuilder, panp, Pbase, pcaGoPromoter, PCpheno, piano, plateCore, plgem, plier, ppiStats, prada, PROMISE, PSEA, puma, pvac, pvca, qcmetrics, QDNAseq, qpgraph, QUALIFIER, quantro, QuasR, qusage, randPack, ReadqPCR, ReportingTools, RforProteomics, RGalaxy, Rmagpie, rMAT, rols, Rtreemix, RUVnormalize, SAGx, ShortRead, SimBindProfiles, simpleaffy, SLGI, SNPchip, SomaticSignatures, spade, spkTools, splicegear, STATegRa, synapter, TEQC, timecourse, topGO, TSSi, twilight, VanillaICE, VariantAnnotation, VariantFiltering, XDE, yri1kgv
Suggests Me betr, BiocCaseStudies, BiocCheck, BiocGenerics, biocViews, breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, BSgenome, Category, ccTutorial, curatedCRCData, DART, dyebiasexamples, estrogen, farms, genefu, GlobalAncova, globaltest, GSAR, Heatplus, interactiveDisplay, kebabs, les, mammaPrintData, messina, nem, OSAT, pkgDepTools, rheumaticConditionWOLLBOLD, ROC, seventyGeneData, survcomp, TargetScore, tkWidgets, TypeInfo, vbmp, widgetTools, yeastExpData, yeastRNASeq

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Biobase_2.26.0.tar.gz
Windows Binary Biobase_2.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Biobase_2.26.0.tgz
Mac OS X 10.9 (Mavericks) Biobase_2.26.0.tgz
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