To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Category")

In most cases, you don't need to download the package archive at all.

Category

Category Analysis

Bioconductor version: Release (2.14)

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Category")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

 

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.30.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends BiocGenerics, AnnotationDbi, Biobase, Matrix, GO.db, methods
Imports BiocGenerics, graph, methods, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6), stats, utils
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
System Requirements
URL
Depends On Me GOstats, meshr, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, GOstats, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Category_2.30.0.tar.gz
Windows Binary Category_2.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Category_2.30.0.tgz
Mac OS X 10.9 (Mavericks) Category_2.30.0.tgz
Browse/checkout source (username/password: readonly)
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