DOI: 10.18129/B9.bioc.AnnotationHubData    

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Release (3.6)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("AnnotationHubData")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML Introduction to AnnotationHubData
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Software
Version 1.8.1
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License Artistic-2.0
Depends R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.9.14)
Imports GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocInstaller, biocViews, AnnotationDbi, Biobase, Biostrings, DBI, GEOquery, GenomeInfoDb, OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
Suggests RUnit, knitr, BiocStyle, grasp2db, BiocInstaller
Depends On Me ExperimentHubData, ProteomicsAnnotationHubData
Imports Me AHEnsDbs
Suggests Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package AnnotationHubData_1.8.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) AnnotationHubData_1.8.1.tgz
Source Repository git clone
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Old Source Packages for BioC 3.6 Source Archive

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