AnnotationHubData
This is the released version of AnnotationHubData; for the devel version, see AnnotationHubData.
All Bioconductor versions of AnnotationHubData
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2
Transform public data resources into Bioconductor Data Structures
Bioconductor version: 3.23 · Package version: 1.42.0
These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.
Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation
From within R, enter citation("AnnotationHubData"):
Martin Morgan, Marc Carlson, Dan Tenenbaum, Sonali Arora, Paul Shannon, Lori Shepherd, Bioconductor Package Maintainer. AnnotationHubData: Transform public data resources into Bioconductor Data Structures. doi:10.18129/B9.bioc.AnnotationHubData, R package version 1.42.0, https://bioconductor.org/packages/AnnotationHubData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationHubData")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.42.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.2 (R-3.2) (10 years) |
| Downloads rank | 302 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Software |
| Package Short Url | https://bioconductor.org/packages/AnnotationHubData/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationHubData")| Introduction to AnnotationHubData | HTML |
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | AnnotationHubData_1.42.0.tar.gz |
| Windows binary (x86_64) | AnnotationHubData_1.42.0.zip |
| macOS binary (arm64) | AnnotationHubData_1.42.0.tgz |
| macOS binary (x86_64) | AnnotationHubData_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnnotationHubData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationHubData |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.2.2), methods, utils, S4Vectors (>= 0.7.21), IRanges (>= 2.3.23), GenomicRanges, AnnotationHub (>= 2.15.15)
Imports: GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, BiocCheck, graph, AnnotationDbi, Biobase, Biostrings, DBI, Seqinfo, GenomeInfoDb (>= 1.45.5), OrganismDbi, RSQLite, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
Suggests: RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
Reverse dependencies
Depends On Me (1): ExperimentHubData
Imports Me (3): AHEnsDbs, AHMassBank, EuPathDB
Suggests Me (6): EPICv2manifest, GenomicState, HubPub, humanHippocampus2024, smokingMouse, TENET.AnnotationHub