To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DSS")

In most cases, you don't need to download the package archive at all.

DSS

Dispersion shrinakge for sequencing data.

Bioconductor version: Release (3.0)

DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.

Author: Hao Wu <hao.wu at emory.edu>

Maintainer: Hao Wu <hao.wu at emory.edu>

Citation (from within R, enter citation("DSS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DSS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DSS")

 

PDF R Script Differential expression for RNA-seq data with dispersion shrinkage
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, DNAMethylation, DifferentialExpression, RNASeq, Sequencing, Software
Version 2.4.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL
Depends Biobase, locfdr
Imports methods, bsseq, edgeR
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me compcodeR

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DSS_2.4.0.tar.gz
Windows Binary DSS_2.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DSS_2.4.0.tgz
Mac OS X 10.9 (Mavericks) DSS_2.4.0.tgz
Browse/checkout source (username/password: readonly)
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