makecdfenv

CDF Environment Maker

Bioconductor version: Release (2.14)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("makecdfenv")

To cite this package in a publication, start R and enter:

    citation("makecdfenv")

Documentation

PDF R Script makecdfenv primer
PDF   Reference Manual

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.40.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
Suggests
System Requirements
URL
Depends On Me altcdfenvs
Imports Me
Suggests Me

Package Downloads

Package Source makecdfenv_1.40.0.tar.gz
Windows Binary makecdfenv_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) makecdfenv_1.40.0.tgz
Mac OS X 10.9 (Mavericks)
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