To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

In most cases, you don't need to download the package archive at all.

makecdfenv

CDF Environment Maker

Bioconductor version: Release (3.0)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")

 

PDF R Script makecdfenv primer
PDF   Reference Manual

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
Suggests
SystemRequirements
URL
Depends On Me altcdfenvs
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source makecdfenv_1.42.0.tar.gz
Windows Binary makecdfenv_1.42.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) makecdfenv_1.42.0.tgz
Mac OS X 10.9 (Mavericks) makecdfenv_1.42.0.tgz
Browse/checkout source (username/password: readonly)
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