To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

In most cases, you don't need to download the package archive at all.

makecdfenv

 

CDF Environment Maker

Bioconductor version: Release (3.1)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("makecdfenv")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")

 

PDF R Script makecdfenv primer
PDF   Reference Manual

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.44.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me altcdfenvs
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source makecdfenv_1.44.0.tar.gz
Windows Binary makecdfenv_1.44.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) makecdfenv_1.44.0.tgz
Mac OS X 10.9 (Mavericks) makecdfenv_1.44.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/makecdfenv/tree/release-3.1
Package Short Url http://bioconductor.org/packages/makecdfenv/
Package Downloads Report Download Stats

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