To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

In most cases, you don't need to download the package archive at all.

makecdfenv

This is the development version of makecdfenv; for the stable release version, see makecdfenv.

CDF Environment Maker

Bioconductor version: Development (3.0)

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

To install this package, start R and enter:

Citation (from within R, enter citation("makecdfenv")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")

 

PDF R Script makecdfenv primer
PDF   Reference Manual

Details

biocViews DataImport, OneChannel, Preprocessing, Software
Version 1.41.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.6.0), affyio
Imports Biobase, affy, methods, stats, utils, zlibbioc
Suggests
System Requirements
URL
Depends On Me altcdfenvs
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source makecdfenv_1.41.0.tar.gz
Windows Binary makecdfenv_1.41.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) makecdfenv_1.41.0.tgz
Mac OS X 10.9 (Mavericks) makecdfenv_1.41.0.tgz
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