To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzR")

In most cases, you don't need to download the package archive at all.

mzR

parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Bioconductor version: Release (2.14)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou

Maintainer: Bernd Fischer <bernd.fischer at embl.de>, Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk>, Qiang Kou <qkou at umail.iu.edu>

Citation (from within R, enter citation("mzR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mzR")

 

PDF R Script mzR, Ramp, mzXML, mzData, mzML
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.10.8
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends Rcpp (>= 0.10.1), methods, utils
Imports Biobase
Suggests msdata(>= 0.1.9), RUnit, faahKO
System Requirements GNU make, NetCDF, zlib
URL
Depends On Me MSnbase, TargetSearch, xcms
Imports Me RMassBank
Suggests Me qcmetrics, RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mzR_1.10.8.tar.gz
Windows Binary mzR_1.10.7.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mzR_1.10.8.tgz
Mac OS X 10.9 (Mavericks) mzR_1.10.8.tgz
Browse/checkout source (username/password: readonly)
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