To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")

In most cases, you don't need to download the package archive at all.

lumiBarnes

 

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: Release (3.1)

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Citation (from within R, enter citation("lumiBarnes")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")

Documentation

PDF   Reference Manual

Details

biocViews ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version 1.8.0
License LGPL
Depends R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me arrayMvout, lumi
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source lumiBarnes_1.8.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/lumiBarnes/
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