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iCheck

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data


Bioconductor version: Release (3.18)

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Citation (from within R, enter citation("iCheck")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")
iCheck PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.2.0), Biobase, lumi, gplots
Imports stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCheck_1.32.0.tar.gz
Windows Binary iCheck_1.32.0.zip
macOS Binary (x86_64) iCheck_1.32.0.tgz
macOS Binary (arm64) iCheck_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCheck
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCheck
Bioc Package Browser https://code.bioconductor.org/browse/iCheck/
Package Short Url https://bioconductor.org/packages/iCheck/
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