ArrayExpress

This is the released version of ArrayExpress; for the devel version, see ArrayExpress.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: Release (3.23)

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan. ArrayExpress: Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet. doi:10.18129/B9.bioc.ArrayExpress, R package version 1.72.0, https://bioconductor.org/packages/ArrayExpress.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Microarray, OneChannel, Software, TwoChannel
Version	1.72.0
In Bioconductor since	BioC 2.3 (R-2.8) (18 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), Biobase (>= 2.4.0)
Imports	oligo, limma, httr, utils, jsonlite, rlang, tools, methods
System Requirements
URL

Suggests	affy
Linking To
Enhances
Depends On Me	DrugVsDisease
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ArrayExpress_1.72.0.tar.gz
Windows Binary (x86_64)	ArrayExpress_1.72.0.zip
macOS Binary (big-sur-x86_64)	ArrayExpress_1.72.0.tgz
macOS Binary (sonoma-arm64)	ArrayExpress_1.72.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayExpress
Package Short Url	https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report	Download Stats