To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpress")

In most cases, you don't need to download the package archive at all.

ArrayExpress

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: Release (3.0)

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam

Maintainer: Ibrahim Emam <iemam at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpress")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

 

PDF R Script ArrayExpress: Import and convert ArrayExpress data sets into R object
PDF   Reference Manual

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.26.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports XML, affy, limma
Suggests
System Requirements
URL
Depends On Me DrugVsDisease
Imports Me
Suggests Me gCMAPWeb, gCMAPWeb, Hiiragi2013

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ArrayExpress_1.26.0.tar.gz
Windows Binary ArrayExpress_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ArrayExpress_1.26.0.tgz
Mac OS X 10.9 (Mavericks) ArrayExpress_1.26.0.tgz
Browse/checkout source (username/password: readonly)
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