phantasus

DOI: 10.18129/B9.bioc.phantasus    

Visual and interactive gene expression analysis

Bioconductor version: Release (3.7)

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

Author: Daria Zenkova [aut], Vladislav Kamenev [aut], Maxim Artyomov [aut], Alexey Sergushichev [aut, cre]

Maintainer: Alexey Sergushichev <alsergbox at gmail.com>

Citation (from within R, enter citation("phantasus")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phantasus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phantasus")

 

HTML R Script Developing new tools
HTML R Script Using phantasus application
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, DataRepresentation, DifferentialExpression, GUI, GeneExpression, Microarray, Normalization, PrincipalComponent, RNASeq, Software, Transcriptomics, Visualization
Version 1.0.1
License MIT + file LICENSE
Depends R (>= 3.5)
Imports ggplot2, protolite, Biobase, GEOquery, Rook, htmltools, httpuv, jsonlite, limma, opencpu, assertthat, methods, httr, rhdf5, utils, parallel, stringr, fgsea, svglite
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown, data.table, svglite
SystemRequirements
Enhances
URL https://genome.ifmo.ru/phantasus https://artyomovlab.wustl.edu/phantasus
BugReports https://github.com/ctlab/phantasus/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phantasus_1.0.1.tar.gz
Windows Binary phantasus_1.0.1.zip
Mac OS X 10.11 (El Capitan) phantasus_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/phantasus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/phantasus
Package Short Url http://bioconductor.org/packages/phantasus/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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