To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("isobar")

In most cases, you don't need to download the package archive at all.

isobar

Analysis and quantitation of isobarically tagged MSMS proteomics data

Bioconductor version: Release (2.14)

isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.

Author: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at> and Jacques Colinge <jcolinge at cemm.oeaw.ac.at>, with contributions from Xavier Robin <xavier.robin at unige.ch> and Florent Gluck <florent.gluck at unige.ch>

Maintainer: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at>

Citation (from within R, enter citation("isobar")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("isobar")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isobar")

 

PDF R Script isobar for developers
PDF R Script isobar for quantification of PTM datasets
PDF R Script isobar package for iTRAQ and TMT protein quantification
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Bioinformatics, MassSpectrometry, MultipleComparisons, Proteomics, QualityControl, Software
Version 1.10.0
In Bioconductor since BioC 2.9 (R-2.14)
License LGPL-2
Depends R (>= 2.10.0), Biobase, stats, methods, plyr
Imports distr
Suggests MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc, gplots, RColorBrewer, gridExtra, limma, boot, distr, Rgbp, DBI, MASS
System Requirements
URL http://www.ms-isobar.org
Depends On Me
Imports Me
Suggests Me RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source isobar_1.10.0.tar.gz
Windows Binary isobar_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) isobar_1.10.0.tgz
Mac OS X 10.9 (Mavericks) isobar_1.10.0.tgz
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