MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: Release (2.14)

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at> with contributions from Guangchuang Yu, Samuel Wieczorek, Vasile-Cosmin Lazar, Vladislav Petyuk and Sebastian Gibb.

Maintainer: Laurent Gatto <lg390 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Base Functions and Classes for MS-based Proteomics
PDF R Script MSnbase development
PDF R Script MSnbase IO capabilities
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.12.1
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 3.1), methods, BiocGenerics(>= 0.7.1), Biobase(>= 2.15.2), ggplot2, mzR
Imports plyr, IRanges, preprocessCore, vsn, grid, reshape2, stats4, affy, impute, pcaMethods, mzID(>= 1.1.5)
Suggests testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRolocdata(>= 1.0.7), msdata
System Requirements
Depends On Me msmsEDA, msmsTests, MSstats, ProCoNA, pRoloc, pRolocdata, synapter
Imports Me
Suggests Me isobar, qcmetrics, RforProteomics, rpx

Package Downloads

Package Source MSnbase_1.12.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MSnbase_1.12.1.tgz
Mac OS X 10.9 (Mavericks)
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