rpx

DOI: 10.18129/B9.bioc.rpx    

R Interface to the ProteomeXchange Repository

Bioconductor version: Release (3.7)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("rpx")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rpx")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

 

HTML R Script An R interface to the ProteomeXchange repository
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 1.16.0
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL-2
Depends methods
Imports xml2, RCurl, utils
LinkingTo
Suggests MSnbase, Biostrings, BiocStyle, testthat, knitr
SystemRequirements
Enhances
URL https://github.com/lgatto/rpx
BugReports https://github.com/lgatto/rpx/issues
Depends On Me proteomics
Imports Me proteoQC, RforProteomics
Suggests Me MSnbase
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_1.16.0.tar.gz
Windows Binary rpx_1.16.0.zip
Mac OS X 10.11 (El Capitan) rpx_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Package Short Url http://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats

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