qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics    

A Framework for Quality Control

Bioconductor version: Release (3.7)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

HTML R Script Index file for the qcmetrics package vignette
PDF R Script The 'qcmetrics' infrastructure for quality control and reporting
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
LinkingTo
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
SystemRequirements
Enhances
URL https://github.com/lgatto/qcmetrics
BugReports https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me MSstatsQC
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.18.0.tar.gz
Windows Binary qcmetrics_1.18.0.zip
Mac OS X 10.11 (El Capitan) qcmetrics_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics
Package Short Url http://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats

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