qcmetrics

A Framework for Quality Control

Bioconductor version: Release (2.14)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("qcmetrics")

To cite this package in a publication, start R and enter:

    citation("qcmetrics")

Documentation

PDF R Script The 'qcmetrics' infrastructure for quality control and reporting
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Microarray, Proteomics, QualityControl, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 2.10)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf
System Requirements
URL https://github.com/lgatto/qcmetrics
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source qcmetrics_1.2.0.tar.gz
Windows Binary qcmetrics_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) qcmetrics_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
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