To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

In most cases, you don't need to download the package archive at all.

qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics    

This is the development version of qcmetrics; for the stable release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: Development (3.7)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

PDF R Script The 'qcmetrics' infrastructure for quality control and reporting
HTML R Script Index file for the qcmetrics package vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.17.0
In Bioconductor since BioC 2.13 (R-3.0) (4 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
LinkingTo
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
SystemRequirements
Enhances
URL https://github.com/lgatto/qcmetrics
BugReports https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me MSstatsQC
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.17.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) qcmetrics_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Package Short Url http://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats

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