AnnotationHub
This is the released version of AnnotationHub; for the devel version, see AnnotationHub.
Client to access AnnotationHub resources
Bioconductor version: Release (3.23)
This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("AnnotationHub")):Martin Morgan, Lori Shepherd. AnnotationHub: Client to access AnnotationHub resources. doi:10.18129/B9.bioc.AnnotationHub, R package version 4.2.2, https://bioconductor.org/packages/AnnotationHub.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationHub")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationHub")| AnnotationHub: AnnotationHub HOW TO's | HTML | R Script |
| AnnotationHub: Access the AnnotationHub Web Service | HTML | R Script |
| Troubleshooting The Hubs | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
| Version | 4.2.2 |
| In Bioconductor since | BioC 2.12 (R-3.0) (13.5 years) |
| License | Artistic-2.0 |
| Depends | BiocGenerics (>= 0.15.10), BiocFileCache (>= 2.99.3) |
| Imports | utils, methods, grDevices, RSQLite, BiocManager, BiocVersion, curl, rappdirs, AnnotationDbi (>= 1.31.19), S4Vectors, httr2, yaml, dplyr, BiocBaseUtils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/Bioconductor/AnnotationHub/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AnnotationHub_4.2.2.tar.gz |
| Windows Binary (x86_64) | AnnotationHub_4.2.2.zip |
| macOS Binary (big-sur-x86_64) | AnnotationHub_4.2.2.tgz |
| macOS Binary (sonoma-arm64) | AnnotationHub_4.2.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AnnotationHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationHub |
| Package Short Url | https://bioconductor.org/packages/AnnotationHub/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |