To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzID")

In most cases, you don't need to download the package archive at all.

mzID

An mzIdentML parser for R

Bioconductor version: Release (3.0)

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

Author: Thomas Lin Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto and Sebastian Gibb.

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("mzID")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzID")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mzID")

 

PDF R Script Using mzID
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Proteomics, Software
Version 1.4.1
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 2)
Depends methods
Imports XML, plyr, parallel, doParallel, foreach, iterators
Suggests knitr, testthat
System Requirements
URL
Depends On Me
Imports Me MSGFgui, MSGFplus, MSnbase, MSnID, Pbase
Suggests Me mzR, RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mzID_1.4.1.tar.gz
Windows Binary mzID_1.4.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mzID_1.4.1.tgz
Mac OS X 10.9 (Mavericks) mzID_1.4.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center