DOI: 10.18129/B9.bioc.mzID    

An mzIdentML parser for R

Bioconductor version: Release (3.6)

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

Author: Thomas Lin Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto and Sebastian Gibb.

Maintainer: Thomas Lin Pedersen <thomasp85 at>

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biocViews DataImport, MassSpectrometry, Proteomics, Software
Version 1.16.0
In Bioconductor since BioC 2.13 (R-3.0) (4.5 years)
License GPL (>= 2)
Depends methods
Imports XML, plyr, parallel, doParallel, foreach, iterators, ProtGenerics
Suggests knitr, testthat
Depends On Me
Imports Me MSGFgui, MSGFplus, MSnbase, MSnID, Pbase
Suggests Me mzR, RforProteomics
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Source Package mzID_1.16.0.tar.gz
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