To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pRoloc")

In most cases, you don't need to download the package archive at all.

pRoloc

A unifying bioinformatics framework for spatial proteomics

Bioconductor version: Release (3.0)

This package implements pattern recognition techniques on quantitiative mass spectrometry data to infer protein sub-cellular localisation.

Author: Laurent Gatto and Lisa M. Breckels with contributions from Thomas Burger and Samuel Wieczorek

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("pRoloc")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pRoloc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRoloc")

 

PDF R Script A state-of-the-art machine learning pipeline for the analysis of spatial proteomics data
PDF R Script Machine learning techniques available in pRoloc
PDF R Script pRoloc -- A unifying bioinformatics framework for organelle proteomics
PDF R Script pRoloc tutorial
PDF   Reference Manual
Text   README
Text   NEWS
Video   pRoloc, pRolocdata and pRolocGUI

Details

biocViews Classification, Clustering, MassSpectrometry, Proteomics, QualityControl, Software
Version 1.6.1
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-2
Depends R (>= 2.15), MSnbase(>= 1.13.3), MLInterfaces(>= 1.37.1), methods, Rcpp (>= 0.10.3), BiocParallel
Imports mclust (>= 4.3), caret, e1071, sampling, class, kernlab, lattice, nnet, randomForest, proxy, FNN, BiocGenerics, stats, RColorBrewer, scales, MASS, knitr, mvtnorm
Suggests testthat, pRolocdata, roxygen2, synapter, xtable
System Requirements
URL
Depends On Me pRolocGUI
Imports Me
Suggests Me MSnbase, pRolocdata, RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pRoloc_1.6.1.tar.gz
Windows Binary pRoloc_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pRoloc_1.6.1.tgz
Mac OS X 10.9 (Mavericks) pRoloc_1.6.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center