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R Interface to epiviz web app

Bioconductor version: Release (3.1)

This package provides Websocket communication to the epiviz web app ( for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and SummarizedExperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.

Author: Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi Goldstein

Maintainer: Hector Corrada Bravo <hcorrada at>

Citation (from within R, enter citation("epivizr")):


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HTML R Script Introduction to epivizr
PDF   Reference Manual
Text   NEWS
Video   Epiviz quick tour


biocViews GUI, Infrastructure, Software, Visualization
Version 1.6.7
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License Artistic-2.0
Depends R (>= 3.0.1), methods, Biobase, GenomicRanges(>= 1.13.47), rtracklayer
Imports S4Vectors, httpuv (>= 1.3.0), rjson, OrganismDbi, R6 (>= 2.0.0), mime (>= 0.2), GenomeInfoDb, GenomicFeatures
Suggests testthat, roxygen2, knitr, antiProfilesData, hgu133plus2.db, knitrBootstrap, Mus.musculus
Depends On Me
Imports Me
Suggests Me
Build Report  

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Package Source epivizr_1.6.7.tar.gz
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Mac OS X 10.9 (Mavericks) epivizr_1.6.7.tgz
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