epivizrData

This is the released version of epivizrData; for the devel version, see epivizrData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Data Management API for epiviz interactive visualization app

Bioconductor version: Release (3.23)

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrData")):

Hector Corrada Bravo, Florin Chelaru. epivizrData: Data Management API for epiviz interactive visualization app. doi:10.18129/B9.bioc.epivizrData, R package version 1.40.0, https://bioconductor.org/packages/epivizrData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")

epivizrData Usage	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software, Visualization
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4), methods, epivizrServer (>= 1.1.1), Biobase
Imports	S4Vectors, GenomicRanges (>= 1.61.1), SummarizedExperiment (>= 1.39.1), OrganismDbi, GenomicFeatures (>= 1.61.4), Seqinfo, IRanges, ensembldb (>= 2.33.1)
System Requirements
URL	http://epiviz.github.io
Bug Reports	https://github.com/epiviz/epivizrData/issues

Suggests	testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats
Linking To
Enhances
Depends On Me
Imports Me	epivizr, epivizrChart, scTreeViz
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrData_1.40.0.tar.gz
Windows Binary (x86_64)	epivizrData_1.40.0.zip
macOS Binary (big-sur-x86_64)	epivizrData_1.40.0.tgz
macOS Binary (sonoma-arm64)	epivizrData_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrData
Package Short Url	https://bioconductor.org/packages/epivizrData/
Package Downloads Report	Download Stats