bumphunter

Bump Hunter

Bioconductor version: Release (2.14)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("bumphunter")

To cite this package in a publication, start R and enter:

    citation("bumphunter")

Documentation

PDF R Script The bumphunter user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Epigenetics, Infrastructure, MultipleComparison, Software
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports matrixStats, limma, doRNG, BiocGenerics, utils
Suggests RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
URL
Depends On Me minfi
Imports Me
Suggests Me

Package Downloads

Package Source bumphunter_1.4.0.tar.gz
Windows Binary bumphunter_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) bumphunter_1.4.0.tgz
Mac OS X 10.9 (Mavericks)
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