To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

In most cases, you don't need to download the package archive at all.

bumphunter

Bump Hunter

Bioconductor version: Release (2.14)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

Citation (from within R, enter citation("bumphunter")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bumphunter")

 

PDF R Script The bumphunter user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Epigenetics, Infrastructure, MultipleComparison, Software
Version 1.4.2
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports matrixStats, limma, doRNG, BiocGenerics, utils
Suggests RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
URL
Depends On Me minfi
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source bumphunter_1.4.2.tar.gz
Windows Binary bumphunter_1.4.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) bumphunter_1.4.2.tgz
Mac OS X 10.9 (Mavericks) bumphunter_1.4.2.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

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