To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOstats")

In most cases, you don't need to download the package archive at all.

GOstats

 

Tools for manipulating GO and microarrays.

Bioconductor version: Release (3.1)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GOstats")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOstats")

 

PDF Hypergeometric tests for less common model organisms
PDF R Script Hypergeometric Tests Using GOstats
PDF R Script Visualizing Data Using GOstats
PDF   Reference Manual

Details

biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version 2.34.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10 years)
License Artistic-2.0
Depends R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports methods, stats, stats4, AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), AnnotationForge
LinkingTo
Suggests hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me attract, MineICA, RDAVIDWebService
Imports Me affycoretools, attract, categoryCompare, facopy, mvGST, ProCoNA, ReportingTools, systemPipeR
Suggests Me BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, MLP, MmPalateMiRNA, neaGUI, oneChannelGUI, phenoDist, qpgraph, RnBeads, safe
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GOstats_2.34.0.tar.gz
Windows Binary GOstats_2.34.0.zip
Mac OS X 10.6 (Snow Leopard) GOstats_2.34.0.tgz
Mac OS X 10.9 (Mavericks) GOstats_2.34.0.tgz
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