Rgraphviz

This is the released version of Rgraphviz; for the devel version, see Rgraphviz.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Provides plotting capabilities for R graph objects

Bioconductor version: Release (3.23)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("Rgraphviz")):

Kasper Daniel Hansen, Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian Hahne, Deepayan Sarkar. Rgraphviz: Provides plotting capabilities for R graph objects. doi:10.18129/B9.bioc.Rgraphviz, R package version 2.56.0, https://bioconductor.org/packages/Rgraphviz.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rgraphviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")

A New Interface to Plot Graphs Using Rgraphviz	PDF	R Script
How To Plot A Graph Using Rgraphviz	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Software, Visualization
Version	2.56.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	EPL
Depends	R (>= 2.6.0), methods, utils, graph, grid
Imports	stats4, graphics, grDevices
System Requirements	optionally Graphviz (>= 2.16), USE_C17
URL

Suggests	RUnit, BiocGenerics, XML
Linking To
Enhances
Depends On Me	biocGraph, BioMVCClass, CellNOptR, flowMerge, gridGraphviz, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs
Imports Me	abn, agena.ai, apComplex, BCDAG, BiDAG, biocGraph, bnem, bnpa, bnRep, CePa, chimeraviz, classGraph, cogmapr, CopulaSCR, CytoML, DEGraph, EnrichDO, EnrichmentBrowser, flowWorkspace, GeneNetworkBuilder, GOstats, hyperdraw, KEGGgraph, mirIntegrator, MIRit, mnem, MRPC, OncoSimulR, ontologyPlot, ontoProc, paircompviz, pathview, Pigengene, qpgraph, scConform, SEMgraph, SGCP, TRONCO, WayFindR
Suggests Me	a4, altcdfenvs, annotate, arulesViz, BayesNetBP, bivarhr, bnlearn, bnstruct, Category, CDSS, CNORfeeder, CNORfuzzy, CodeDepends, DEGraph, flowCore, gbutils, GeneNet, geneplotter, GlobalAncova, globaltest, gRain, GSEABase, iTOP, kst, kstMatrix, lava, loon, maGUI, micd, MLP, multiplex, NCIgraph, NCIgraphData, netmeta, pcalg, PCBN, pchc, PFCI, pks, proftools, psych, RBGL, rBiopaxParser, rCausalMGM, relations, rEMM, rPref, safe, sisal, SNAData, SPIA, SRAdb, textplot, tm, topGO, topologyGSA, tpc, unifDAG, ViSEAGO, vtpnet, zenplots
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rgraphviz_2.56.0.tar.gz
Windows Binary (x86_64)	Rgraphviz_2.56.0.zip
macOS Binary (big-sur-x86_64)	Rgraphviz_2.56.0.tgz
macOS Binary (sonoma-arm64)	Rgraphviz_2.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rgraphviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rgraphviz
Package Short Url	https://bioconductor.org/packages/Rgraphviz/
Package Downloads Report	Download Stats