NCIgraph

Pathways from the NCI Pathways Database

Bioconductor version: Release (2.14)

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("NCIgraph")

To cite this package in a publication, start R and enter:

    citation("NCIgraph")

Documentation

PDF R Script NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Pathways, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends graph, R (>= 2.10.0)
Imports graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3
Suggests Rgraphviz
System Requirements
URL
Depends On Me
Imports Me DEGraph
Suggests Me DEGraph

Package Downloads

Package Source NCIgraph_1.12.0.tar.gz
Windows Binary NCIgraph_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) NCIgraph_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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