To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

In most cases, you don't need to download the package archive at all.

NCIgraph

Pathways from the NCI Pathways Database

Bioconductor version: Release (2.14)

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Citation (from within R, enter citation("NCIgraph")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

 

PDF R Script NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF   Reference Manual

Details

biocViews GraphAndNetwork, Pathways, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends graph, R (>= 2.10.0)
Imports graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3
Suggests Rgraphviz
System Requirements
URL
Depends On Me
Imports Me DEGraph
Suggests Me DEGraph

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source NCIgraph_1.12.0.tar.gz
Windows Binary NCIgraph_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) NCIgraph_1.12.0.tgz
Mac OS X 10.9 (Mavericks) NCIgraph_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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