To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

In most cases, you don't need to download the package archive at all.

CNORfuzzy

Addon to CellNOptR: Fuzzy Logic

Bioconductor version: Release (2.14)

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CNORfuzzy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")

 

PDF R Script Main vignette:Playing with networks using CNORfuzzyl
PDF   Reference Manual
Text   NEWS

Details

biocViews Network, Software
Version 1.6.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5)
Imports
Suggests xtable, Rgraphviz, RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNORfuzzy_1.6.0.tar.gz
Windows Binary CNORfuzzy_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNORfuzzy_1.6.0.tgz
Mac OS X 10.9 (Mavericks) CNORfuzzy_1.6.0.tgz
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