GSEABase

Gene set enrichment data structures and methods

Bioconductor version: Release (2.14)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSEABase")

To cite this package in a publication, start R and enter:

    citation("GSEABase")

Documentation

PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.26.0
In Bioconductor since BioC 2.1 (R-2.6)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), annotate, methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
System Requirements
URL
Depends On Me AGDEX, BicARE, gCMAP, GSVA, GSVAdata, npGSEA, PROMISE
Imports Me Category, categoryCompare, cellHTS2, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me BiocCaseStudies, gage, GlobalAncova, globaltest, GOstats, GSEAlm, PGSEA, phenoTest

Package Downloads

Package Source GSEABase_1.26.0.tar.gz
Windows Binary GSEABase_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSEABase_1.26.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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