To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSEABase")

In most cases, you don't need to download the package archive at all.

GSEABase

Gene set enrichment data structures and methods

Bioconductor version: Release (2.14)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSEABase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

 

PDF R Script An introduction to GSEABase
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.26.0
In Bioconductor since BioC 2.1 (R-2.6)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), annotate, methods, graph(>= 1.37.2)
Imports AnnotationDbi, XML
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
System Requirements
URL
Depends On Me AGDEX, BicARE, gCMAP, GSVA, GSVAdata, npGSEA, PROMISE
Imports Me Category, categoryCompare, cellHTS2, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me BiocCaseStudies, gage, GlobalAncova, globaltest, GOstats, GSEAlm, PGSEA, phenoTest

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSEABase_1.26.0.tar.gz
Windows Binary GSEABase_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSEABase_1.26.0.tgz
Mac OS X 10.9 (Mavericks) GSEABase_1.26.0.tgz
Browse/checkout Source (username/password: readonly)
Package Downloads Report Download Stats

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