To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("topGO")

In most cases, you don't need to download the package archive at all.

topGO

topGO: Enrichment analysis for Gene Ontology

Bioconductor version: Release (2.14)

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author: Adrian Alexa, Jorg Rahnenfuhrer

Maintainer: Adrian Alexa <adrian.alexa at gmail.com>

Citation (from within R, enter citation("topGO")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("topGO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("topGO")

 

PDF R Script topGO
PDF   Reference Manual

Details

biocViews Microarray, Software, Visualization
Version 2.16.0
In Bioconductor since BioC 2.0 (R-2.5)
License LGPL
Depends R (>= 2.10.0), methods, graph(>= 1.14.0), Biobase(>= 2.0.0), GO.db(>= 2.3.0), AnnotationDbi(>= 1.7.19), SparseM (>= 0.73)
Imports methods, graph, Biobase, SparseM, AnnotationDbi, lattice
Suggests ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest
System Requirements
URL
Depends On Me ccTutorial, RNAither, tRanslatome
Imports Me GOSim
Suggests Me Ringo

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source topGO_2.16.0.tar.gz
Windows Binary topGO_2.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) topGO_2.16.0.tgz
Mac OS X 10.9 (Mavericks) topGO_2.16.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center