To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("FGNet")

In most cases, you don't need to download the package archive at all.

FGNet

Functional gene networks derived from biological enrichment analyses

Bioconductor version: Release (3.0)

Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSA) and topGO.

Author: Sara Aibar, Celia Fontanillo, Conrad Droste and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.

Maintainer: Sara Aibar <saibar at usal.es>

Citation (from within R, enter citation("FGNet")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("FGNet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FGNet")

 

PDF R Script FGNet-vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Clustering, FunctionalGenomics, GO, GeneSetEnrichment, Network, NetworkEnrichment, Pathways, Software, Visualization
Version 3.0.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 2)
Depends R (>= 2.15)
Imports igraph (>= 0.6), RCurl, hwriter, R.utils, XML, plotrix, reshape2, RColorBrewer, png, gage, topGO, KEGGprofile, BiocInstaller
Suggests GO.db, KEGG.db, reactome.db, RDAVIDWebService, RUnit, BiocGenerics, org.Sc.sgd.db, knitr, AnnotationDbi, RGtk2
System Requirements
URL http://www.cicancer.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source FGNet_3.0.0.tar.gz
Windows Binary FGNet_3.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) FGNet_3.0.0.tgz
Mac OS X 10.9 (Mavericks) FGNet_3.0.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center