Parses BioPax files and represents them in R

Bioconductor version: Release (2.14)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script rBiopaxParser Vignette
PDF   Reference Manual
Text   NEWS


biocViews DataRepresentation, Software
Version 2.2.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>= 2)
Depends R (>= 3.0.0), data.table
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL
System Requirements
URL https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me
Suggests Me NetPathMiner

Package Downloads

Package Source rBiopaxParser_2.2.0.tar.gz
Windows Binary rBiopaxParser_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rBiopaxParser_2.2.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center