To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

In most cases, you don't need to download the package archive at all.

rBiopaxParser

 

   

This is the development version of rBiopaxParser; for the stable release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: Development (3.5)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

 

PDF R Script rBiopaxParser Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Software
Version 2.15.0
In Bioconductor since BioC 2.12 (R-3.0) (3.5 years)
License GPL (>= 2)
Depends R (>= 3.0.0), data.table
Imports XML
LinkingTo
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL, igraph
SystemRequirements
Enhances
URL https://github.com/frankkramer-lab/rBiopaxParser
Depends On Me
Imports Me AnnotationHubData, pwOmics
Suggests Me AnnotationHub, NetPathMiner
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rBiopaxParser_2.15.0.tar.gz
Windows Binary rBiopaxParser_2.15.0.zip
Mac OS X 10.9 (Mavericks) rBiopaxParser_2.15.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rBiopaxParser
Package Short Url http://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report Download Stats

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