To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("vtpnet")

In most cases, you don't need to download the package archive at all.

vtpnet

variant-transcription factor-phenotype networks

Bioconductor version: Release (3.0)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF R Script vtpnet: variant-transcription factor-network tools
PDF   Reference Manual

Details

biocViews Network, Software
Version 0.6.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
Suggests MotifDb, VariantAnnotation, Rgraphviz
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source vtpnet_0.6.0.tar.gz
Windows Binary vtpnet_0.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) vtpnet_0.6.0.tgz
Mac OS X 10.9 (Mavericks) vtpnet_0.6.0.tgz
Browse/checkout source (username/password: readonly)
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