To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

In most cases, you don't need to download the package archive at all.

vtpnet

DOI: 10.18129/B9.bioc.vtpnet    

This is the development version of vtpnet; for the stable release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: Development (3.7)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF R Script vtpnet: variant-transcription factor-network tools
PDF   Reference Manual

Details

biocViews Network, Software
Version 0.19.0
In Bioconductor since BioC 2.13 (R-3.0) (4 years)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
LinkingTo
Suggests MotifDb, VariantAnnotation, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vtpnet_0.19.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) vtpnet_0.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vtpnet
Package Short Url http://bioconductor.org/packages/vtpnet/
Package Downloads Report Download Stats

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