gwascat

DOI: 10.18129/B9.bioc.gwascat    

This is the development version of gwascat; for the stable release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Bioconductor version: Development (3.15)

Represent and model data in the EMBL-EBI GWAS catalog.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gwascat")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gwascat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Genetics, Software
Version 2.27.0
In Bioconductor since BioC 2.10 (R-2.15) (9.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods
Imports S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), GenomicFeatures, readr, Biostrings, AnnotationDbi, BiocFileCache, snpStats, VariantAnnotation, AnnotationHub
LinkingTo
Suggests DO.db, DT, knitr, RBGL, testthat, rmarkdown, Gviz, Rsamtools, IRanges, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
SystemRequirements
Enhances SNPlocs.Hsapiens.dbSNP144.GRCh37
URL
Depends On Me liftOver, vtpnet
Imports Me circRNAprofiler
Suggests Me GenomicScores, hmdbQuery, ldblock, parglms, TFutils
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/gwascat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gwascat
Package Short Url https://bioconductor.org/packages/gwascat/
Package Downloads Report Download Stats

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