snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Development (3.0)

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpStats")

To cite this package in a publication, start R and enter:

    citation("snpStats")

Documentation

PDF R Script Data input
PDF R Script Fst
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.15.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10.0), survival, Matrix, methods
Imports graphics, grDevices, stats, utils, BiocGenerics
Suggests hexbin
System Requirements
URL
Depends On Me GGBase, GGdata, ggtut
Imports Me FunciSNP, GGtools, gwascat
Suggests Me crlmm, GWASTools, VariantAnnotation

Package Downloads

Package Source snpStats_1.15.0.tar.gz
Windows Binary snpStats_1.15.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) snpStats_1.15.0.tgz
Mac OS X 10.9 (Mavericks)
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