snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 3.24 · Package version: 1.63.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

DOI: 10.18129/B9.bioc.snpStats

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("snpStats")

Details

Maintainer	David Clayton <dc208@cam.ac.uk>
Author	David Clayton <dc208@cam.ac.uk>
License	GPL-3
Source branch	devel
Build report	Bioconductor build system, r-universe
biocViews	GeneticVariability, Microarray, SNP, Software
Package Short Url	https://bioconductor.org/packages/snpStats/

Citation

From within R, enter citation("snpStats"):

David Clayton. snpStats: SnpMatrix and XSnpMatrix classes and methods. doi:10.18129/B9.bioc.snpStats, R package version 1.63.0, https://bioconductor.org/packages/snpStats.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	snpStats_1.63.0.tar.gz
Windows binary (x86_64)	snpStats_1.63.0.zip
macOS binary (arm64)	snpStats_1.63.0.tgz
macOS binary (x86_64)	snpStats_1.63.0.tgz

Dependencies

Depends: R (>= 2.10.0), survival, Matrix, methods

Imports: graphics, grDevices, stats, utils, BiocGenerics

Suggests: hexbin

Reverse dependencies

Depends On Me (1): MAGAR

Imports Me (12): cardelino, dartR.base, DExMA, GenomicTools.fileHandler, gpcp, GWASbyCluster, gwascat, martini, RVS, scoreInvHap, SNPkit, TriadSim

Suggests Me (14): adjclust, crlmm, dartR, dartR.popgen, genio, GenomicFiles, GWASTools, ldblock, omicRexposome, omicsPrint, pegas, RcppDPR, statgenGWAS, VariantAnnotation