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This is the development version of AnnotationDbi; for the stable release version, see AnnotationDbi.

Annotation Database Interface

Bioconductor version: Development (3.4)

Provides user interface and database connection code for annotation data packages using SQLite data storage.

Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("AnnotationDbi")):


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PDF R Script AnnotationDbi: Introduction To Bioconductor Annotation Packages
PDF R Script How to use bimaps from the ".db" annotation packages
PDF   Reference Manual
Text   NEWS
Video   Using AnnotationDb objects


biocViews Annotation, GenomeAnnotation, Microarray, Sequencing, Software
Version 1.35.3
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, stats4, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), IRanges
Imports methods, utils, DBI, RSQLite, stats4, BiocGenerics, Biobase, S4Vectors(>= 0.9.25), IRanges
Suggests DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db,, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
Depends On Me a4Base, a4Preproc, annotate, AnnotationForge, AnnotationFuncs, attract, Category, chimera, ChromHeatMap, customProDB, DEXSeq, EGSEA, eisa, ExpressionView, FEM, GenomicFeatures, GOFunction, goProfiles, maPredictDSC, MGFM, miRNAtap, MLP, OrganismDbi, PAnnBuilder, pathRender, PGSEA, proBAMr, RpsiXML, safe, SemDist, topGO
Imports Me adSplit, affycoretools, affylmGUI, AllelicImbalance, annaffy, AnnotationHub, AnnotationHubData, beadarray, biomaRt, BioNet, biovizBase, bumphunter, CancerMutationAnalysis, categoryCompare, cellity, ChIPpeakAnno, ChIPseeker, clusterProfiler, CoCiteStats, compEpiTools, CrispRVariants, csaw, customProDB, debrowser, derfinder, domainsignatures, DOSE, dSimer, EDASeq, ensembldb, erma, ExpressionView, gage, gCMAP, gCMAPWeb, genefilter, geneplotter, GenVisR, GGBase, ggbio, GGtools, GlobalAncova, globaltest, GOFunction, GOSemSim, goseq, GOSim, GOstats, goTools, gQTLstats, graphite, GSEABase, Gviz, gwascat, HTSanalyzeR, InPAS, interactiveDisplay, IVAS, keggorthology, KEGGprofile, limmaGUI, lumi, mAPKL, mdgsa, MeSHDbi, methyAnalysis, methylumi, MineICA, MiRaGE, mirIntegrator, miRNAmeConverter, missMethyl, mvGST, NanoStringQCPro, PADOG, PAnnBuilder, pathview, pcaExplorer, pcaGoPromoter, PCpheno, PGA, phenoTest, pwOmics, qpgraph, rCGH, ReactomePA, REDseq, ReportingTools, rgsepd, rTRM, ScISI, SGSeq, SLGI, SMITE, SpidermiR, SVM2CRM, tigre, ToPASeq, trackViewer,, VariantAnnotation, VariantFiltering
Suggests Me BiocCaseStudies, BiocGenerics, FGNet, geecc, GeneAnswers, GeneRegionScan, GenomicRanges, limma, miRLAB, MmPalateMiRNA, oligo, oligo, oneChannelGUI, piano, pRoloc, qcmetrics, R3CPET, sigPathway, SummarizedExperiment
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