biovizBase

Basic graphic utilities for visualization of genomic data.

Bioconductor version: Development (3.0)

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("biovizBase")

To cite this package in a publication, start R and enter:

    citation("biovizBase")

Documentation

PDF R Script An Introduction to biovizBase
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Preprocessing, Software, Visualization
Version 1.13.6
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), methods
Imports methods, grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, S4Vectors(>= 0.0.2), IRanges(>= 1.99.2), GenomicRanges(>= 1.13.3), Biostrings, Rsamtools(>= 1.17.3), GenomicAlignments, GenomicFeatures, AnnotationDbi, VariantAnnotation, GenomeInfoDb
Suggests BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
System Requirements
URL
Depends On Me CAFE, qrqc
Imports Me ggbio, Gviz, qrqc
Suggests Me Rariant

Package Downloads

Package Source biovizBase_1.13.6.tar.gz
Windows Binary biovizBase_1.13.6.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) biovizBase_1.13.6.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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