To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

In most cases, you don't need to download the package archive at all.

BSgenome.Hsapiens.UCSC.hg19

 

   

This is the development version of BSgenome.Hsapiens.UCSC.hg19; for the stable release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: Development (3.4)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
LinkingTo
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, traseR
Imports Me BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, MADSEQ, RCAS
Suggests Me AneuFinder, ArrayTV, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, CNEr, CRISPRseek, DNAshapeR, ensembldb, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, GenomicAlignments, GenomicFeatures, GenomicRanges, GenVisR, ggbio, gmapR, GoogleGenomics, GUIDEseq, Gviz, h5vc, InPAS, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, oneChannelGUI, OrganismDbi, PGA, qsea, R453Plus1Toolbox, Rariant, rGADEM, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, spliceR, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, YAPSA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Package Short Url http://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
Package Downloads Report Download Stats

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