To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifmatchr")

In most cases, you don't need to download the package archive at all.

motifmatchr

DOI: 10.18129/B9.bioc.motifmatchr    

This is the development version of motifmatchr; for the stable release version, see motifmatchr.

Fast Motif Matching in R

Bioconductor version: Development (3.7)

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

Author: Alicia Schep [aut, cre], Stanford University [cph]

Maintainer: Alicia Schep <aschep at gmail.com>

Citation (from within R, enter citation("motifmatchr")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifmatchr")

Documentation

HTML R Script motifmatchr
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MotifAnnotation, Software
Version 1.1.1
License GPL-3 + file LICENSE
Depends R (>= 3.3)
Imports Matrix, Rcpp, methods, TFBSTools, Biostrings, BSgenome, S4Vectors, SummarizedExperiment, GenomicRanges, IRanges, Rsamtools, GenomeInfoDb
LinkingTo Rcpp, RcppArmadillo
Suggests testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me chromVAR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package motifmatchr_1.1.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) motifmatchr_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/motifmatchr
Package Short Url http://bioconductor.org/packages/motifmatchr/
Package Downloads Report Download Stats

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