To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maftools")

In most cases, you don't need to download the package archive at all.

maftools

DOI: 10.18129/B9.bioc.maftools    

This is the development version of maftools; for the stable release version, see maftools.

Summarize, Analyze and Visualize MAF Files

Bioconductor version: Development (3.6)

Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.

Author: Anand Mayakonda <anand_mt at hotmail.com>

Maintainer: Anand Mayakonda <anand_mt at hotmail.com>

Citation (from within R, enter citation("maftools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maftools")

Documentation

HTML R Script Summarize, Analyze and Visualize MAF Files
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Classification, DNASeq, DataRepresentation, DriverMutation, FeatureExtraction, FunctionalGenomics, Sequencing, Software, SomaticMutation, Survival, VariantAnnotation, Visualization
Version 1.3.75
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports data.table, ggplot2 (>= 2.0), cowplot, cometExactTest, RColorBrewer, NMF, ggrepel, methods, ComplexHeatmap, mclust, VariantAnnotation, Biostrings, Rsamtools, rjson, grid, wordcloud, grDevices, changepoint, gridExtra, survival
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/PoisonAlien/maftools
BugReports https://github.com/PoisonAlien/maftools/issues
Depends On Me
Imports Me TCGAbiolinksGUI
Suggests Me TCGAbiolinks
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package maftools_1.3.75.tar.gz
Windows Binary maftools_1.3.75.zip
Mac OS X 10.11 (El Capitan) maftools_1.3.75.tgz
Source Repository git clone https://git.bioconductor.org/packages/maftools
Package Short Url http://bioconductor.org/packages/maftools/
Package Downloads Report Download Stats

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